Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs7962321 | chr12:9807073 | C/T | 0.000125 | 67 | 7.6 | 21.8 | 27.88 | KM Plot |
UVM | rs7965019 | chr12:132604248 | A/G | 3.82E-7 | 66 | 31.83 | 23.63 | 0.73 | KM Plot |
UVM | rs7967102 | chr12:9770749 | C/T | 0.00014 | 66 | 27.37 | 21.8 | 7.6 | KM Plot |
UVM | rs7973603 | chr12:9807553 | C/T | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs7974299 | chr12:132613274 | C/T | 3.82E-7 | 66 | 31.83 | 23.63 | 0.73 | KM Plot |
UVM | rs7974871 | chr12:9816703 | G/T | 0.000125 | 67 | 7.6 | 21.8 | 27.88 | KM Plot |
UVM | rs7976530 | chr12:132609140 | C/T | 4.29E-7 | 67 | 27.92 | 24.87 | 0.73 | KM Plot |
UVM | rs7978187 | chr12:9816875 | T/G | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs79889771 | chr20:30235159 | A/G | 6.36E-5 | 67 | 27.92 | 8.25 | 7.6 | KM Plot |
UVM | rs8025458 | chr15:40842299 | G/A | 0.000236 | 67 | 27.9 | 24.82 | 16.78 | KM Plot |
UVM | rs8026523 | chr15:40654066 | G/T | 5.12E-7 | 66 | 26.55 | 24.87 | 1.27 | KM Plot |
UVM | rs8027487 | chr15:40654067 | T/A | 5.12E-7 | 66 | 26.55 | 24.87 | 1.27 | KM Plot |
UVM | rs8032285 | chr15:29413378 | A/G | 0.000147 | 65 | 7.6 | 31.27 | 25.77 | KM Plot |
UVM | rs8033303 | chr15:40649700 | C/T | 7.25E-7 | 65 | 26.6 | 21.13 | 1.27 | KM Plot |
UVM | rs8037207 | chr15:40655500 | G/A | 5.12E-7 | 66 | 26.55 | 24.87 | 1.27 | KM Plot |